Search Java Classes and Packages
#Org.biojava.nbio.ws.alignment Classes and Interfaces - 14 results found.
| Name | Description | Type | Package | Framework |
| BlastAlignmentParameterEnum | enum BlastAlignmentParameterEnumAlignment request parameters accepted by QBlast service. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| BlastJob | Information about QBlast search jobAuthor:Gediminas Rimsa | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| BlastMatrixEnum | enum BlastMatrixEnumEnum representing matrices supported by QBlast | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| BlastOutputAlignmentFormatEnum | enum BlastOutputAlignmentFormatEnumEnum representing available output alignment types. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| BlastOutputFormatEnum | enum BlastOutputFormatEnumEnum representing available output formats. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| BlastOutputParameterEnum | enum BlastOutputParameterEnumOutput parameters accepted by QBlast service. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| BlastProgramEnum | enum BlastProgramEnumEnum representing available blast programs. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| MapToStringTransformer | Transforms Map to String. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| NCBIQBlastAlignmentProperties | This class wraps a QBlast search request parameter Map by adding several convenient parameter addition methods. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| NCBIQBlastOutputProperties | This class wraps a QBlast output parameter Map by adding several convenient parameter addition methods. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| NCBIQBlastService | Provides a simple way of submitting BLAST request to the QBlast service at NCBI. | Class | org.biojava.nbio.ws.alignment.qblast | BioJava |
| RemotePairwiseAlignmentOutputProperties | RemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object. | Interface | org.biojava.nbio.ws.alignment | BioJava |
| RemotePairwiseAlignmentProperties | RemotePairwiseAlignmentProperties is a interface that contains the barest of methods for setting and getting Alignment properties. | Interface | org.biojava.nbio.ws.alignment | BioJava |
| RemotePairwiseAlignmentService | This interface specifies minimal information needed to execute a pairwise alignment on a remote service. | Interface | org.biojava.nbio.ws.alignment | BioJava |