| Name | Description | Type | Package | Framework |
| Angle | Class | org.jscience.chemistry.gui.extended.geometry | JScience | |
| Atom | Class | org.jscience.chemistry.gui.extended.molecule | JScience | |
| AtomNode | Fields inherited from class javax. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| AtomVector | Tripos AtomVector classFields inherited from class java. | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| Bond | Class | org.jscience.chemistry.gui.extended.molecule | JScience | |
| BondNode | Fields inherited from class javax. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| BondVector | Tripos BondVector classFields inherited from class java. | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| CentralDisplayAdapter | Class | org.jscience.chemistry.gui.extended.beans | JScience | |
| CentralLookup | Class | org.jscience.chemistry.gui.extended.beans | JScience | |
| Cylinder | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience | |
| DragBehavior | Fields inherited from class javax. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| EvntHandler | An implementation of a JViewer's event handler interface which allows the contents of one or more JViewers to be manipulated in response to mouse | Class | org.jscience.chemistry.gui.extended.jviewer | JScience |
| GeometryUtils | A public class that provides mathematical calculation on some geometry entities. | Class | org.jscience.chemistry.gui.extended.geometry | JScience |
| GeoVector3D | A geometric vector class that provides vector computations: length, normalize, dot and cross. | Class | org.jscience.chemistry.gui.extended.geometry | JScience |
| IcoSphere | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience | |
| IEvntHandler | Interface | org.jscience.chemistry.gui.extended.jviewer | JScience | |
| IndexedCylinder | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience | |
| IRenderer | This class defines an interface which allows the JViewer to render and manipulate any graphics object which implements this interface. | Interface | org.jscience.chemistry.gui.extended.jviewer | JScience |
| JViewer | This class provides a viewer which can render and manipulate one or more Note: Only the reference to the Tripos Java molecule's Matrix3D class keeps | Class | org.jscience.chemistry.gui.extended.jviewer | JScience |
| Line | A class that defines geometric straight line in 3D spaceConstructor SummaryLine() | Class | org.jscience.chemistry.gui.extended.geometry | JScience |
| Matrix3D | A fairly conventional 3D matrix object that can transform sets of 3D points and perform a variety of manipulations on the transform. | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| Mol2FileFilter | Class | org.jscience.chemistry.gui.extended | JScience | |
| MolecularScene | protected MolecularScene(javax. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| Molecule | Tripos base molecule classSee Also:AtomVector, | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| MoleculeNode | Fields inherited from class javax. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| MoleculeVector | Tripos MoleculeVector classFields inherited from class java. | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| MolTranslateMOL2 | Translates Tripos MOL2 files to/from Tripos Java Molecule format. | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| MolViewerEvent | Class | org.jscience.chemistry.gui.extended.beans | JScience | |
| MolViewerEventAdapter | Class | org.jscience.chemistry.gui.extended.beans | JScience | |
| MolViewerEventListener | Interface | org.jscience.chemistry.gui.extended.beans | JScience | |
| MouseFastRotate | MouseFastRotate. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| Panel3D | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience | |
| Parser | Reads and parses a Tripos Java Molecule (JMol) stream into a JMol class. | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| Point3D | Class | org.jscience.chemistry.gui.extended.geometry | JScience | |
| PropAttributes | This is a base class which the Atom and Bond classes include. | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| PropAttributesInter | Interface | org.jscience.chemistry.gui.extended.molecule | JScience | |
| Renderer | An implementation of a JViewer's renderer interface for drawing and manipulating a Molecule. | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| RenderStyle | Interface | org.jscience.chemistry.gui.extended.graphics3d | JScience | |
| RenderTable | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience | |
| Ring | Class | org.jscience.chemistry.gui.extended.molecule | JScience | |
| RingVector | Tripos RingVector classSee Also:Serialized Form | Class | org.jscience.chemistry.gui.extended.molecule | JScience |
| SharedAtomGroup | SharedAtomGroup. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| SharedBondGroup | SharedBondGroup. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| SimpleViewer | Class | org.jscience.chemistry.gui.extended | JScience | |
| SimpleViewer .AppCloser | protected SimpleViewer. | Class | org.jscience.chemistry.gui.extended | JScience |
| Sphere | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience | |