| Name | Description | Type | Package | Framework |
| AbstractBase | The base class for all elementObjects in the Schema Any element may have attributes:titleiddictRefconventionand convenience get/set methods are provided for all, through | Interface | org.jscience.ml.cml | JScience |
| AbstractCMLDocument | Interface | org.jscience.ml.cml | JScience | |
| AbstractCMLDocumentImpl | Class | org.jscience.ml.cml.cmlimpl | JScience | |
| BaseTool | Interface | org.jscience.ml.cml | JScience | |
| BaseToolImpl | Class | org.jscience.ml.cml.cmlimpl | JScience | |
| Choice2 | offers the choice of 0 or 1; useful to restrict argument values (rather like enum). | Class | org.jscience.ml.cml.util | JScience |
| Choice3 | offers the choice of 0, 1 or 2; useful to restrict argument values (rather like enum). | Class | org.jscience.ml.cml.util | JScience |
| CMLBaseImpl | The base class for all elementObjects mentioned in the Schema Any CML element may have attributes:titleiddictRefconvention | Class | org.jscience.ml.cml.cmlimpl | JScience |
| CMLDocumentFactory | Interface | org.jscience.ml.cml | JScience | |
| CMLException | CML-Specific exceptions may be thrown by CML-DOM classes and interfaces There is no systematised set of error messages yet. | Class | org.jscience.ml.cml | JScience |
| CMLNode | Interface | org.jscience.ml.cml | JScience | |
| CMLUtils | A number of miscellaneous tools. | Class | org.jscience.ml.cml.util | JScience |
| CommandOption | Constructor SummaryCommandOption(java. | Class | org.jscience.ml.cml.util | JScience |
| CommandOptionManager | Interface | org.jscience.ml.cml.util | JScience | |
| CommandOptions | Class | org.jscience.ml.cml.util | JScience | |
| CommandOptionValue | Constructor SummaryCommandOptionValue(java. | Class | org.jscience.ml.cml.util | JScience |
| CyclicVector | a 'cyclic vector' that is element[0] succeeds element[nElem-1] where nElem is size. | Class | org.jscience.ml.cml.util | JScience |
| DocumentFactoryImpl | Class | org.jscience.ml.cml.cmlimpl | JScience | |
| JumboLogger | logger for JUMBO/CML. | Class | org.jscience.ml.cml.logger | JScience |
| JumboXmlHandler | allows logging of JUMBO/CML-based XML DOMs as well as messages. | Class | org.jscience.ml.cml.logger | JScience |
| Picker | An interface analagous to java. | Interface | org.jscience.ml.cml.util | JScience |
| PMRCDATASectionImpl | Fields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRCharacterDataImpl | Fields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRCommentImpl | Fields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRDocument | Delegation-based DOMFields inherited from interface org. | Interface | org.jscience.ml.cml.dom.pmr | JScience |
| PMRDocumentBuilder | Class | org.jscience.ml.cml.dom.pmr | JScience | |
| PMRDocumentBuilderFactory | at present hardcoded to using defaultConstructor SummaryPMRDocumentBuilderFactory() | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRDocumentFragmentImpl | Fields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRDocumentImpl | The Document interface represents the entire HTML or XML document. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRDocumentTypeImpl | Fields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRDOMImplementationImpl | Class | org.jscience.ml.cml.dom.pmr | JScience | |
| PMRDOMUtils | Class | org.jscience.ml.cml.util | JScience | |
| PMRElementImpl | Delegation-based implementationFields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMREntityReferenceImpl | Fields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRError | Class | org.jscience.ml.cml.util | JScience | |
| PMRNodeImpl | Class | org.jscience.ml.cml.dom.pmr | JScience | |
| PMRNodeListImpl | The NodeList interface provides the abstraction of an ordered collection of nodes, without defining or constraining how this collection | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRProcessingInstructionImpl | Fields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRTextImpl | Fields inherited from class org. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| PMRUserDataHandlerImpl | When associating an object to a key on a node using Node. | Class | org.jscience.ml.cml.dom.pmr | JScience |
| SaxHandler | Interface | org.jscience.ml.cml | JScience | |
| SaxHandlerImpl | Class | org.jscience.ml.cml.cmlimpl | JScience | |
| ValueBox | Class | org.jscience.ml.cml.util | JScience | |
| Workflow | Interface | org.jscience.ml.cml | JScience | |