Search Java Classes and Packages
#Org.jscience.ml.sbml Classes and Interfaces - 59 results found.
| Name | Description | Type | Package | Framework |
| AlgebraicRule | A rule that expresses equations with left-hand side of zero. | Class | org.jscience.ml.sbml | JScience |
| Annotations | Stores the annotation metadata for an SBML node. | Class | org.jscience.ml.sbml | JScience |
| AssignmentRule | A rule that expresses equations which set the value of variables. | Class | org.jscience.ml.sbml | JScience |
| ASTConstant | Fields inherited from class org. | Class | org.jscience.ml.sbml.jep | JScience |
| ASTElse | Fields inherited from class org. | Class | org.jscience.ml.sbml.jep | JScience |
| ASTElseIfThen | Fields inherited from class org. | Class | org.jscience.ml.sbml.jep | JScience |
| ASTFunNode | Fields inherited from class org. | Class | org.jscience.ml.sbml.jep | JScience |
| ASTIfThen | Fields inherited from class org. | Class | org.jscience.ml.sbml.jep | JScience |
| ASTPiecewise | Fields inherited from class org. | Class | org.jscience.ml.sbml.jep | JScience |
| ASTStart | Fields inherited from class org. | Class | org.jscience.ml.sbml.jep | JScience |
| ASTVarNode | Fields inherited from class org. | Class | org.jscience.ml.sbml.jep | JScience |
| Compartment | A bounded container in which species are located. | Class | org.jscience.ml.sbml | JScience |
| DoubleNumberFactory | Default class for creating number objects. | Class | org.jscience.ml.sbml.jep.type | JScience |
| EvaluatorVisitor | This class is used for the evaluation of an expression. | Class | org.jscience.ml.sbml.jep | JScience |
| Event | An instantaneous discontinuous change in the state of the model when a criterion is met. | Class | org.jscience.ml.sbml | JScience |
| EventAssignment | The variable assignments made when an Event is executed. | Class | org.jscience.ml.sbml | JScience |
| FunctionDefinition | An association between an identifier and a mathematical function. | Class | org.jscience.ml.sbml | JScience |
| FunctionTable | See Also:Serialized FormConstructor SummaryFunctionTable() | Class | org.jscience.ml.sbml.jep | JScience |
| JavaCharStream | An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (with java-like unicode escape | Class | org.jscience.ml.sbml.jep | JScience |
| JEP | The JEP class is the main interface with which the user should interact. | Class | org.jscience.ml.sbml.jep | JScience |
| KineticLaw | The mathematics of the rate of the enclosing Reaction. | Class | org.jscience.ml.sbml | JScience |
| MathElement | A class that holds a user or program defined value. | Class | org.jscience.ml.sbml.math | JScience |
| MathElement | This code is licensed under the DARPA BioCOMP Open Source License. | Interface | org.jscience.ml.sbml | JScience |
| MathMLConvertor | A class for converting MathML to normal math. | Class | org.jscience.ml.sbml.math | JScience |
| MathMLConvertorSAX | This code is licensed under the DARPA BioCOMP Open Source License. | Class | org.jscience.ml.sbml.math | JScience |
| MathMLExpression | This code is licensed under the DARPA BioCOMP Open Source License. | Class | org.jscience.ml.sbml.math | JScience |
| Model | This class defines a grouping of components - MathDefinitions, Compartments, Species, Reactions, Parameters, Events, Rules, and UnitDefinitions. | Class | org.jscience.ml.sbml | JScience |
| ModifierSpeciesReference | This class defines a modifier that takes part in a Reaction. | Class | org.jscience.ml.sbml | JScience |
| Node | Interface | org.jscience.ml.sbml.jep | JScience | |
| Node | Represents a node in a parse tree based on XML (in particular MathML). | Class | org.jscience.ml.sbml.math | JScience |
| Notes | Stores the note metadata for an SBML node. | Class | org.jscience.ml.sbml | JScience |
| NumberFactory | This interface can be implemented to create numbers of any object type. | Interface | org.jscience.ml.sbml.jep.type | JScience |
| Parameter | This class declares a variable for use in MathML structures. | Class | org.jscience.ml.sbml | JScience |
| ParseException | This exception is thrown when parse errors are encountered. | Class | org.jscience.ml.sbml.jep | JScience |
| Parser | Class | org.jscience.ml.sbml.jep | JScience | |
| ParserConstants | Interface | org.jscience.ml.sbml.jep | JScience | |
| ParserDumpVisitor | Class | org.jscience.ml.sbml.jep | JScience | |
| ParserTokenManager | Class | org.jscience.ml.sbml.jep | JScience | |
| ParserTreeConstants | Interface | org.jscience.ml.sbml.jep | JScience | |
| ParserVisitor | Interface | org.jscience.ml.sbml.jep | JScience | |
| PostfixMathCommand | Function classes extend this class. | Class | org.jscience.ml.sbml.jep.function | JScience |
| PostfixMathCommandI | All function classes must implement this interface to ensure that the run() method is implemented. | Interface | org.jscience.ml.sbml.jep.function | JScience |
| RateRule | A rule that expresses equations which set the rate of change of variables. | Class | org.jscience.ml.sbml | JScience |
| Reaction | This class represents a reaction, which is some transformation, transport or binding process that can change the amount of one or more | Class | org.jscience.ml.sbml | JScience |
| Rule | Rules put constraints on variables in cases for which the constraint cannot be expressed as a reacion or initial value. | Class | org.jscience.ml.sbml | JScience |
| SBase | The base class for the main SBML Level 2 data types. | Class | org.jscience.ml.sbml | JScience |
| SBaseId | Name and id for an sbml node. | Class | org.jscience.ml.sbml | JScience |
| SBMLLevel2Document | This class represents a SBML Level 2 Document This code is licensed under the DARPA BioCOMP Open Source License. | Class | org.jscience.ml.sbml | JScience |
| SBMLLevel2Reader | Reads a SBML Level 2 file into a Model. | Class | org.jscience.ml.sbml | JScience |
| SBMLNode | A class representing a node in a parse tree. | Class | org.jscience.ml.sbml.math | JScience |
| SimpleNode | Class | org.jscience.ml.sbml.jep | JScience | |
| Species | This class represents an entity that takes part in Reactions. | Class | org.jscience.ml.sbml | JScience |
| SpeciesReference | A class defining a reference to a Species for use in a Reaction. | Class | org.jscience.ml.sbml | JScience |
| StoichiometryMath | This code is licensed under the DARPA BioCOMP Open Source License. | Class | org.jscience.ml.sbml | JScience |
| Token | Describes the input token stream. | Class | org.jscience.ml.sbml.jep | JScience |
| TokenMgrError | See Also:Serialized FormConstructor SummaryTokenMgrError() | Class | org.jscience.ml.sbml.jep | JScience |
| Unit | Units of measurement for quantities in an SBML model. | Class | org.jscience.ml.sbml | JScience |
| UnitDefinition | A combination of Units to create a user-defined unit of measurement. | Class | org.jscience.ml.sbml | JScience |
| UnitManager | Manages a collection of unit definitions. | Class | org.jscience.ml.sbml | JScience |