| Name | Description | Type | Package | Framework |
| DebugAdductFormula | Class | org.openscience.cdk.debug | CDK | |
| DebugAminoAcid | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugAtom | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugAtomContainer | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugAtomContainerSet | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugAtomParity | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugAtomType | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugBioPolymer | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugBond | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugChemFile | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugChemModel | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugChemObject | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugChemObjectBuilder | Class | org.openscience.cdk.debug | CDK | |
| DebugChemSequence | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugCrystal | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugElectronContainer | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugElement | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugFragmentAtom | Class to represent an IPseudoAtom which embeds an IAtomContainer. | Class | org.openscience.cdk.debug | CDK |
| DebugIsotope | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugLonePair | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugMapping | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugMolecularFormula | Class | org.openscience.cdk.debug | CDK | |
| DebugMolecularFormulaSet | Class | org.openscience.cdk.debug | CDK | |
| DebugMolecule | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugMoleculeSet | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugMonomer | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugPDBAtom | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugPDBMonomer | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugPDBPolymer | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugPDBStructure | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugPolymer | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugPseudoAtom | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugReaction | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugReactionScheme | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugReactionSet | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugRing | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugRingSet | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugSingleElectron | Debugging data class. | Class | org.openscience.cdk.debug | CDK |
| DebugStrand | Debugging data class. | Class | org.openscience.cdk.debug | CDK |