| Name | Description | Type | Package | Framework |
| EStateFingerprinter | This fingerprinter generates 79 bit fingerprints using the E-State The E-State fragments are those described in and | Class | org.openscience.cdk.fingerprint | CDK |
| ExtendedFingerprinter | Generates an extended fingerprint for a given IAtomContainer, that extends the Fingerprinter with additional bits describing ring | Class | org.openscience.cdk.fingerprint | CDK |
| Fingerprinter | Generates a fingerprint for a given AtomContainer. | Class | org.openscience.cdk.fingerprint | CDK |
| FingerprinterTool | Tool with helper methods for IFingerprint. | Class | org.openscience.cdk.fingerprint | CDK |
| GraphOnlyFingerprinter | Specialized version of the Fingerprinter which does not take bond ordersAuthor:egonwSee Also:FingerprinterKeywords:fingerprint, similarityCreated on:2007-01-11 | Class | org.openscience.cdk.fingerprint | CDK |
| HybridizationFingerprinter | Generates a fingerprint for a given IAtomContainer. | Class | org.openscience.cdk.fingerprint | CDK |
| IFingerprinter | Interface for fingerprint calculators. | Interface | org.openscience.cdk.fingerprint | CDK |
| KlekotaRothFingerprinter | SMARTS based substructure fingerprint based on Chemical substructures that enrich for biological activity . | Class | org.openscience.cdk.fingerprint | CDK |
| MACCSFingerprinter | This fingerprinter generates 166 bit MACCS keys. | Class | org.openscience.cdk.fingerprint | CDK |
| PubchemFingerprinter | Generates a Pubchem fingerprint for a molecule. | Class | org.openscience.cdk.fingerprint | CDK |
| StandardSubstructureSets | Class | org.openscience.cdk.fingerprint | CDK | |
| SubstructureFingerprinter | IFingerprinter that gives a bit set which has a size equal to the number of substructures it was constructed from. | Class | org.openscience.cdk.fingerprint | CDK |