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#Org.openscience.cdk.silent Classes and Interfaces - 39 results found.
NameDescriptionTypePackageFramework
AdductFormulaClass defining an adduct object in a MolecularFormula.Classorg.openscience.cdk.silentCDK
AminoAcidA AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.Classorg.openscience.cdk.silentCDK
AtomRepresents the idea of an chemical atom.Classorg.openscience.cdk.silentCDK
AtomContainerBase class for all chemical objects that maintain a list of Atoms and ElectronContainers.Classorg.openscience.cdk.silentCDK
AtomContainerSetA set of AtomContainers.Classorg.openscience.cdk.silentCDK
AtomParityRepresents the concept of an atom parity identifying the stereochemistry around an atom, given four neighbouring atoms.Classorg.openscience.cdk.silentCDK
AtomTypeThe base class for atom types.Classorg.openscience.cdk.silentCDK
BioPolymerA BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.Classorg.openscience.cdk.silentCDK
Bond considered to be a number of electrons connecting two or more of atoms.Classorg.openscience.cdk.silentCDK
ChemFileA Object containing a number of ChemSequences.Classorg.openscience.cdk.silentCDK
ChemModelAn object containing multiple MoleculeSet and the other lower level concepts like rings, sequences, Classorg.openscience.cdk.silentCDK
ChemObjectThe base class for all chemical objects in this cdk.Classorg.openscience.cdk.silentCDK
ChemSequenceA sequence of ChemModels, which can, for example, be used to store the course of a reaction.Classorg.openscience.cdk.silentCDK
CrystalClass representing a molecular crystal.Classorg.openscience.cdk.silentCDK
ElectronContainerBase class for entities containing electrons, like bonds, orbitals, lone-pairs.Classorg.openscience.cdk.silentCDK
Element Use the IsotopeFactory to get a ready-to-use elements by symbol or atomic number:Classorg.openscience.cdk.silentCDK
FragmentAtomClass to represent an IPseudoAtom which embeds an IAtomContainer.Classorg.openscience.cdk.silentCDK
IsotopeUsed to store and retrieve data of a particular isotope.Classorg.openscience.cdk.silentCDK
LonePairA LonePair is an orbital primarily located with one Atom, containingSee Also:Serialized FormKeywords:orbital, lone-pairClassorg.openscience.cdk.silentCDK
MappingA Mapping is an relation between two ChemObjects in a non-chemical entity.Classorg.openscience.cdk.silentCDK
MolecularFormulaClass defining a molecular formula object.Classorg.openscience.cdk.silentCDK
MolecularFormulaSetClass defining an set object of MolecularFormulas.Classorg.openscience.cdk.silentCDK
MoleculeRepresents the concept of a chemical molecule, an object composed of atoms connected by bonds.Classorg.openscience.cdk.silentCDK
MoleculeSetA set of molecules, for example those taking part in a reaction.Classorg.openscience.cdk.silentCDK
MonomerA Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.Classorg.openscience.cdk.silentCDK
PDBAtomRepresents the idea of an atom as used in PDB files.Classorg.openscience.cdk.silentCDK
PDBMonomerRepresents the idea of an monomer as used in PDB files.Classorg.openscience.cdk.silentCDK
PDBPolymerAn entry in the PDB database.Classorg.openscience.cdk.silentCDK
PDBStructureHolder for secundary protein structure elements.Classorg.openscience.cdk.silentCDK
PolymerSubclass of Molecule to store Polymer specific attributes that a Polymer has.Classorg.openscience.cdk.silentCDK
PseudoAtomRepresents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.Classorg.openscience.cdk.silentCDK
ReactionRepresents the idea of a chemical reaction.Classorg.openscience.cdk.silentCDK
ReactionSchemeClasses that extends the definition of reaction to a scheme.Classorg.openscience.cdk.silentCDK
ReactionSetA set of reactions, for example those taking part in a reaction.Classorg.openscience.cdk.silentCDK
RingClass representing a ring structure in a molecule.Classorg.openscience.cdk.silentCDK
RingSetMaintains a set of Ring objects.Classorg.openscience.cdk.silentCDK
SilentChemObjectBuilderClassorg.openscience.cdk.silentCDK
SingleElectronA Single Electron is an orbital which is occupied by only one electron.Classorg.openscience.cdk.silentCDK
StrandA Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.Classorg.openscience.cdk.silentCDK