| Name | Description | Type | Package | Framework |
| BKKCKCF | This class implements Bron-Kerbosch clique detection algorithm as it is described in [F. | Class | org.openscience.cdk.smsd.algorithm.mcsplus | CDK |
| ExactMapping | This class handles MCS between two identical molecules. | Class | org.openscience.cdk.smsd.algorithm.mcsplus | CDK |
| GenerateCompatibilityGraph | This class generates compatibility graph between query and target molecule. | Class | org.openscience.cdk.smsd.algorithm.mcsplus | CDK |
| MCSPlus | This class handles MCS plus algorithm which is a combination of c-clique algorithm and McGregor algorithm. | Class | org.openscience.cdk.smsd.algorithm.mcsplus | CDK |
| MCSPlusHandler | This class acts as a handler class for MCSPlus algorithm. | Class | org.openscience.cdk.smsd.algorithm.mcsplus | CDK |