| Name | Description | Type | Package | Framework |
| AminoAcidManipulator | Class with convenience methods that provide methods to manipulateAuthor:Egon WillighagenCreated on:2005-08-19 | Class | org.openscience.cdk.tools.manipulator | CDK |
| AtomContainerComparator | Compares two IAtomContainers for order with the following criteria with decreasing priority: Compare molecular weight (heavy atoms only) | Class | org.openscience.cdk.tools.manipulator | CDK |
| AtomContainerComparatorBy2DCenter | Compares two IAtomContainers based on their 2D position. | Class | org.openscience.cdk.tools.manipulator | CDK |
| AtomContainerManipulator | Class with convenience methods that provide methods to manipulate AtomContainer's. | Class | org.openscience.cdk.tools.manipulator | CDK |
| AtomContainerSetManipulator | Class | org.openscience.cdk.tools.manipulator | CDK | |
| AtomTypeManipulator | Class with utilities for the AtomType class. | Class | org.openscience.cdk.tools.manipulator | CDK |
| BondManipulator | Class with convenience methods that provide methods to manipulate AtomContainer's. | Class | org.openscience.cdk.tools.manipulator | CDK |
| ChemFileManipulator | Class with convenience methods that provide methods from methods from ChemObjects within the ChemFile. | Class | org.openscience.cdk.tools.manipulator | CDK |
| ChemModelManipulator | Class with convenience methods that provide methods from methods from ChemObjects within the ChemModel. | Class | org.openscience.cdk.tools.manipulator | CDK |
| ChemSequenceManipulator | Class with convenience methods that provide methods from methods from ChemObjects within the ChemSequence. | Class | org.openscience.cdk.tools.manipulator | CDK |
| MolecularFormulaManipulator | Class with convenience methods that provide methods to manipulate IMolecularFormula's. | Class | org.openscience.cdk.tools.manipulator | CDK |
| MolecularFormulaRangeManipulator | Class with convenience methods that provide methods to manipulate MolecularFormulaRange's. | Class | org.openscience.cdk.tools.manipulator | CDK |
| MolecularFormulaSetManipulator | Class with convenience methods that provide methods to manipulate MolecularFormulaSet's. | Class | org.openscience.cdk.tools.manipulator | CDK |
| MoleculeSetManipulator | Class | org.openscience.cdk.tools.manipulator | CDK | |
| ReactionManipulator | Class | org.openscience.cdk.tools.manipulator | CDK | |
| ReactionSchemeManipulator | Class | org.openscience.cdk.tools.manipulator | CDK | |
| ReactionSetManipulator | Class | org.openscience.cdk.tools.manipulator | CDK | |
| RingManipulator | Class | org.openscience.cdk.tools.manipulator | CDK | |
| RingSetManipulator | Class | org.openscience.cdk.tools.manipulator | CDK | |
| RingSizeComparator | Class | org.openscience.cdk.tools.manipulator | CDK | |